PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS54310 to PF02698 (DUF218)

VIMSS54310 has 282 amino acids

Query:       DUF218  [M=133]
Accession:   PF02698.23
Description: DUF218 domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-36  109.2   0.0    9.9e-36  108.8   0.0    1.1  1  VIMSS54310  


Domain annotation for each sequence (and alignments):
>> VIMSS54310  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.0   9.9e-36   9.9e-36       1     133 []      89     251 ..      89     251 .. 0.91

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 9.9e-36
      DUF218   1 daivVLG.................aalevlaaRldeaaelyreg...kiivsGgggdeevseaeamaryleeelgvpe.rilledksrnTyenarfske 78 
                 d+++VLG                 aal     Rl+e++++ r +   k+i+sG  g++evs+a++mar++++ lgvp+ +i+l +++++T+e+ar++++
  VIMSS54310  89 DYVMVLGnghvidddipptseltrAALM----RLTEGIRISRMYpgsKLILSGYAGGSEVSHARMMARVALA-LGVPKsDIILLETAKDTWEEARQAAA 182
                 89*****988888888887666655556....************8777******7789*************6.****66******************** PP

      DUF218  79 ll.gksvllVTsafHmpRalllfrkag..vi.apt.............dllpsaealsassqlrlalrEylg 133
                 ++ +k+++lVTsa+Hm+Ra++ f++ag  +i apt             +++p++++l++++   ++++E+lg
  VIMSS54310 183 FVqQKRMVLVTSASHMKRAMREFESAGltPIpAPTnylghlniiqpwdKYIPRSRYLEQTE---QYWHETLG 251
                 **6559*********************98888999*******9999999999999999999...*****997 PP



Or compare VIMSS54310 to CDD or PaperBLAST