VIMSS54357 has 663 amino acids
Query: GmrSD_N [M=199]
Accession: PF03235.19
Description: GmrSD restriction endonuclease, N-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-36 112.7 0.4 1.3e-36 112.7 0.4 2.4 2 VIMSS54357
Domain annotation for each sequence (and alignments):
>> VIMSS54357
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 112.7 0.4 1.3e-36 1.3e-36 1 199 [] 14 230 .. 14 230 .. 0.72
2 ? -1.5 1.3 0.12 0.12 106 106 .. 538 538 .. 375 631 .. 0.67
Alignments for each domain:
== domain 1 score: 112.7 bits; conditional E-value: 1.3e-36
GmrSD_N 1 ledllskeksgfliPdyQRgyvWdeeqvedLiedike.....lrgyplGsivlwkeaededgkyeviDGQQRltTltlllkalee...d.......... 81
le++++++ + f iP+yQR+yvW++++v L+ dike + +y++G+i+ + ++d++++ye+iDGQQR+tTl+l+ a+++ +
VIMSS54357 14 LEKIYTDNYQ-FSIPSYQRPYVWSDDDVLLLFRDIKEacrlkEPNYFIGTILSSRIEQDGERIYELIDGQQRTTTLMLMTIAFKYagiKsdlaglavyt 111
5788888888.9*****************************99**********7666666**********************33343212233344433 PP
GmrSD_N 82 ekekeeeeklklekreedkdffekllenekeelesleklkelngkkfkdlseeekseseknlikayelikek.................ai.eklklve 162
++ e++ +l+++ re+ ++ + l ++ + s+ ++++ ++ + k++ a+++++++ ++ +++ v+
VIMSS54357 112 SSDGEDKPRLQFSIREQVQQLLGGLAGLKNYQVPSK-----------ETIA---DNAYLKQMGVALDVLTKEveklksddgvsaeamgdYLyRQVQWVN 196
444444555554444444444444444444433332...........2222...24444444444444444456666667777777777677899**** PP
GmrSD_N 163 ieldseddedeafeiFerlNsrGvpLsaadllkalll 199
+++++d +++F ++N+ G++L++ad+lka+l+
VIMSS54357 197 NIVPTQMD---LNRLFATMNTAGIQLEQADILKAKLF 230
***99999...***********************997 PP
== domain 2 score: -1.5 bits; conditional E-value: 0.12
GmrSD_N 106 l 106
l
VIMSS54357 538 L 538
2 PP
Or compare VIMSS54357 to CDD or PaperBLAST