VIMSS544534 has 366 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6e-43 132.9 0.0 8.7e-43 132.4 0.0 1.2 1 VIMSS544534
Domain annotation for each sequence (and alignments):
>> VIMSS544534
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 132.4 0.0 8.7e-43 8.7e-43 1 192 [. 153 354 .. 153 358 .. 0.94
Alignments for each domain:
== domain 1 score: 132.4 bits; conditional E-value: 8.7e-43
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.......lkaeaeeear..aelklygsDldrrvv 89
R yRv+ +pa L +t+A +l+rl++w+ g++llDP+CGsGti+IEaal ++i+p + +++ + +e+e++++ +++k+ ++D++ +++
VIMSS544534 153 RYYRVYYHPAGLAPTIANSLIRLTKWN-GQSLLDPLCGSGTIPIEAALYLREIPPLYRQYDKTFayqlnpdIIDEIEQSIKwdRKAKILCFDKFVKHM 249
78************************6.899***********************976666666688899999999999999988899*********** PP
UPF0020 90 qgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkvk 185
+ga+ N +a+v+d++++s+ + ++ l e+ +d i+tnpPYG++ + ++ ek ++ + +++ +l+ +g l+ll ++++ + k +e+ ++ ++
VIMSS544534 250 RGAELNCIHARVKDIVKVSKINLEDVDfkLGEKAIDYIITNPPYGIKAADREESEKVHEYLFYQAEYILKDNGVLALLSPHKEWVLKYAEKYNFTLKH 347
************************9998888999**********************************************************999999 PP
UPF0020 186 eknvklg 192
e+ ++++
VIMSS544534 348 EREIYHN 354
9988776 PP
Or compare VIMSS544534 to CDD or PaperBLAST