VIMSS55339 has 210 amino acids
Query: UPF0029 [M=107]
Accession: PF01205.25
Description: Uncharacterized protein family UPF0029
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.1e-38 116.0 0.1 8.1e-38 115.0 0.0 1.5 2 VIMSS55339
Domain annotation for each sequence (and alignments):
>> VIMSS55339
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 115.0 0.0 8.1e-38 8.1e-38 1 107 [] 20 127 .. 20 127 .. 0.98
2 ? -2.9 0.1 0.39 0.39 4 23 .. 159 178 .. 157 190 .. 0.65
Alignments for each domain:
== domain 1 score: 115.0 bits; conditional E-value: 8.1e-38
TTEEEEEEEEE-SSHHHHHHHHHHH--..TTSSEEEEEEE...ETT.E.EEEE-TTSSTTSSHHHHHHHHHHTTB-SEEEEEEEE--SS--HHHHHHHH CS
UPF0029 1 kkSkFiahaapveseeeakelleelkkehkkAtHnvyAyrieeeed.eierssDdgEpsgtAGkpilevlekeeltnvlvvvtRyfGGikLGagglvra 98
kkS Fi+++a++ + ++ak++++e+k++h +A+Hn++A++ + e+ sDdgEpsgtAGkpil +l+++++ ++++vvtRy+GG++LG+gglv+a
VIMSS55339 20 KKSLFITYLAHTPDLASAKAFVDEIKQRHADARHNCWAFVAGRPENsMLWGLSDDGEPSGTAGKPILAQLTGSHIGEITAVVTRYYGGVLLGTGGLVKA 118
89***************************************98888899************************************************** PP
HHHHHHHHH CS
UPF0029 99 yskaakeal 107
y +++al
VIMSS55339 119 YGGGVQQAL 127
***999986 PP
== domain 2 score: -2.9 bits; conditional E-value: 0.39
EEEEEEEE-SSHHHHHHHHH CS
UPF0029 4 kFiahaapveseeeakelle 23
+F a+ ++++ +e+++ ++e
VIMSS55339 159 QFSATEMEAHYNEQVEMVVE 178
56666777777777777665 PP
Or compare VIMSS55339 to CDD or PaperBLAST