PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS55412 to PF08349 (DUF1722)

VIMSS55412 has 322 amino acids

Query:       DUF1722  [M=117]
Accession:   PF08349.15
Description: Protein of unknown function (DUF1722)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-49  150.9   2.8    9.1e-49  150.9   2.8    1.6  2  VIMSS55412  


Domain annotation for each sequence (and alignments):
>> VIMSS55412  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.56      0.56      75      86 ..      86      97 ..      78     102 .. 0.59
   2 !  150.9   2.8   9.1e-49   9.1e-49       1     117 []     197     313 ..     197     313 .. 1.00

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.56
     DUF1722 75 leliekYrkgkv 86
                   +e+Y+++kv
  VIMSS55412 86 TAALESYSQQKV 97
                455666666654 PP

  == domain 2  score: 150.9 bits;  conditional E-value: 9.1e-49
     DUF1722   1 KyllmahsqkeyrelgrlvanakkkpleelleeYeellmealkkkatrkkhinvlqhifgyfkkklsseekqelleliekYrkgkvplsvpltlLkhya 99 
                 K++lmah++++yr+lgrlvan k++pl+++++eY+  lm+al+++a+rk+++nvl+h++gyfk++l++ +k+el+++ie+Yr g++pl +p+tlLkhy+
  VIMSS55412 197 KLTLMAHNPQAYRALGRLVANVKQYPLDSFIQEYRLGLMQALAHRASRKNNTNVLMHLQGYFKRSLNKLQKAELAQVIESYRVGELPLLAPITLLKHYL 295
                 99************************************************************************************************* PP

     DUF1722 100 rkydneyllqqtylnpyP 117
                 + +++ yl+qq+ylnpyP
  VIMSS55412 296 ALFPDAYLAQQRYLNPYP 313
                 *****************9 PP



Or compare VIMSS55412 to CDD or PaperBLAST