PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS5546614 to PF11248 (DUF3046)

VIMSS5546614 has 99 amino acids

Query:       DUF3046  [M=62]
Accession:   PF11248.12
Description: Protein of unknown function (DUF3046)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-29   86.1   0.3      1e-28   85.8   0.3    1.1  1  VIMSS5546614  


Domain annotation for each sequence (and alignments):
>> VIMSS5546614  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.3     1e-28     1e-28       1      61 [.      23      83 ..      23      84 .. 0.99

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 1e-28
       DUF3046  1 MRlteFwelveeeFGsayaeslardhvlselggrTaeeAleaGvdprdVWralcdafdvPe 61
                  MR++eFwel+ee+FG++y++sl rd+ + +l ++T+ eAl+aG++pr VW+ lcd+++vP+
  VIMSS5546614 23 MREREFWELLEEVFGRTYGRSLSRDQRMPKLANMTVVEALDAGEEPRVVWNVLCDQMEVPD 83
                  ************************************************************8 PP



Or compare VIMSS5546614 to CDD or PaperBLAST