VIMSS55555 has 638 amino acids
Query: GmrSD_N [M=199]
Accession: PF03235.19
Description: GmrSD restriction endonuclease, N-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-27 83.2 1.1 1.4e-27 83.2 1.1 3.0 3 VIMSS55555
Domain annotation for each sequence (and alignments):
>> VIMSS55555
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 3.8 0.5 0.0031 0.0031 118 190 .. 111 194 .. 33 197 .. 0.67
2 ! 83.2 1.1 1.4e-27 1.4e-27 7 198 .. 266 411 .. 259 412 .. 0.90
3 ? -1.6 0.2 0.13 0.13 110 110 .. 516 516 .. 458 603 .. 0.56
Alignments for each domain:
== domain 1 score: 3.8 bits; conditional E-value: 0.0031
GmrSD_N 118 eklkelngkkfkdlseeekseseknlikayelikek........ai...eklklveieldseddedeafeiFerlNsrGvpLsa 190
++ + + + k+l+++e +e ++++ + ++ ++ +i +kl+ ++++ + e+d d + +i e++ + v+Ls
VIMSS55555 111 RDSNTHELGTIKELTASETREIKRKIDRYRDFDVSQfyelhreqTIqlkHKLDSIFTKYPGESDVDAVKDIIEKIQELEVRLSE 194
2222222223333333333333333333333322225555555544457899999999999999999*9999999988888875 PP
== domain 2 score: 83.2 bits; conditional E-value: 1.4e-27
GmrSD_N 7 keksgfliPdyQRgyv.WdeeqvedLiedikelrgyplGsivlw....keaede.dgkyeviDGQQRltTltlllkaleedekekeeeeklklekreed 99
+e l P+yQR+ + W +++ +Lie+i l+g+pl+ ++++ k+ae+e d + viDG QR+tTl+ ++++
VIMSS55555 266 NEI--DLTPEYQRKDRiWPIKDRARLIESI--LLGLPLPVFYFAeranKDAESEvDFDWVVIDGLQRTTTLVDFVQG---------------------- 338
333..489**********************..************99976666669**********************...................... PP
GmrSD_N 100 kdffekllenekeelesleklkelngkkfkdlseeekseseknlikayelikekaieklklveieldseddedeafeiFerlNsrGvpLsaadllkall 198
k++l++l++l+++++++fkdl+++e+++ +++ i + + + +d+e+ + e+F r+N+ G++Ls ++++ al+
VIMSS55555 339 -----------KFALKDLNQLPKYDNCYFKDLPRKEQRKIREYQIHGHLIQVS---------------NDSEEMIRELFHRINTYGKNLSYQEIRSALY 411
...........77788889999999*******999999999999999988876...............588999*********************9986 PP
== domain 3 score: -1.6 bits; conditional E-value: 0.13
GmrSD_N 110 e 110
+
VIMSS55555 516 D 516
1 PP
Or compare VIMSS55555 to CDD or PaperBLAST