PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS5606913 to PF05656 (DUF805)

VIMSS5606913 has 280 amino acids

Query:       DUF805  [M=111]
Accession:   PF05656.20
Description: Protein of unknown function (DUF805)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-28   86.2  11.4    3.6e-28   84.5  11.4    1.9  1  VIMSS5606913  


Domain annotation for each sequence (and alignments):
>> VIMSS5606913  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5  11.4   3.6e-28   3.6e-28       1     111 []     112     263 ..     112     263 .. 0.73

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 3.6e-28
        DUF805   1 yfsfsGRarRkeywlfvlfnllvllvlglla...sllgaslsaeavgl.lllvlillvvlalllpslavtvRRlhDigrsgwlillalipii..... 88 
                   y++f+GRarRke+wlf+lf+l++l++  ++    +++  ++ + a  + +++v+ +lv++ lllp++avtvRRlhD++rsg +++ +++p +     
  VIMSS5606913 112 YVDFKGRARRKEFWLFTLFYLIALVIPPAVIipiAVIYRHTIDIALCIrICVVVEILVIFSLLLPAYAVTVRRLHDTNRSGLWVIASIVPRVlaegl 208
                   89******************8875555555545533443444444444578888899999999******************7778888887767777 PP

        DUF805  89 ..........................gli.......illlvllllpgtpgenrYGp 111
                                               +       il+lv+++ +gt+genr+Gp
  VIMSS5606913 209 gvifgqkwliqiaegefptlllinmfL-LlidlcvsILILVMMCERGTEGENRFGP 263
                   777777666666665555554444430.0345555558888**************8 PP



Or compare VIMSS5606913 to CDD or PaperBLAST