PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS561801 to PF13349 (DUF4097)

VIMSS561801 has 301 amino acids

Query:       DUF4097  [M=247]
Accession:   PF13349.12
Description: Toastrack DUF4097
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-15   40.8   1.8    2.4e-14   39.4   1.8    1.7  1  VIMSS561801  


Domain annotation for each sequence (and alignments):
>> VIMSS561801  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   1.8   2.4e-14   2.4e-14       9     212 ..      67     264 ..      60     277 .. 0.60

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 2.4e-14
      DUF4097   9 esadvtikqsere.nitveysgskkkkkdakenggtLtitgkeknatsvgmslssgekteiivyiPkkyledlevkl.ssGdislsgdklelkdlalk 104
                   s dv+i+qs+++  +t+e++++     ++ ++ggtL i++k + ++s      +++   i ++ P+ +    e++l +sGdi+++  k+ l+ l ++
  VIMSS561801  67 GSMDVNIQQSTSGqALTIEAESNILPLVETVVEGGTLVIKMKPSLSIS------INKGVRIRITTPQLS----EAELhGSGDITFA-GKFRLRSLRIE 153
                  399********99679999999999999899*********99887764......345555555555555....2333266677766.56666666654 PP

      DUF4097 105 .tssGdislkdvk.aeelkvks.tsGdvsidgseakelklett.sGdieleslsgkdldakst.sGDikvsntklagslkitatsGdidlslpesasa 197
                   ++sGdi+ ++++ a++l+v    sGd++       ++ l ++ sGdi+l+    + ++a ++ sGDik++ ++  + lk++  sGd++ +  ++++a
  VIMSS561801 154 lSGSGDITFANATiANDLNVSLrGSGDIRGNILTGRNATLSLAgSGDIDLSLGHPQRVEAGISgSGDIKIKGQTAFAALKCS-GSGDLECRNLSAQQA 250
                  3556666666666455666654236666665555555555543366666666666666665433666666666666666664.455665555544555 PP

      DUF4097 198 gvdasstsGdvsipe 212
                   v++s  sGd ++ +
  VIMSS561801 251 DVRIS-GSGDGKLAV 264
                  55543.345544444 PP



Or compare VIMSS561801 to CDD or PaperBLAST