VIMSS562478 has 425 amino acids
Query: DUF1302 [M=541]
Accession: PF06980.17
Description: Protein of unknown function (DUF1302)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-13 36.9 7.8 6.3e-12 31.2 5.7 2.8 2 VIMSS562478
Domain annotation for each sequence (and alignments):
>> VIMSS562478
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 4.2 0.0 0.00095 0.00095 77 113 .. 57 93 .. 51 95 .. 0.92
2 ! 31.2 5.7 6.3e-12 6.3e-12 139 469 .. 91 377 .. 87 425 .] 0.72
Alignments for each domain:
== domain 1 score: 4.2 bits; conditional E-value: 0.00095
DUF1302 77 dlvsnrlkatseldlkygnygffvrgkafyDavydnk 113
d++s+r+++ +el+ + gn ++ v+++a+y a ++++
VIMSS562478 57 DFMSSRTRVRGELERSFGNSKVAVSVNATYNALLKDE 93
889***************************9988875 PP
== domain 2 score: 31.2 bits; conditional E-value: 6.3e-12
DUF1302 139 eagrgaelldaYvygsfdlgdrplsvRlGrQvvnWGeslfvlnGinq.inplDvsklrrpGae.lkeallPvpmvsaslqltdglsleafyqfewept 234
+++ g++l++a++ ++ + +RlGrQ+v WG ++ v i + i+p+D++ + a+ +++++Pv+++++s+ +++ +++e + +e++
VIMSS562478 91 KDETGLRLREAFFEHQ----EEHWGLRLGRQIVIWGAADGV--RITDlISPMDMTEF---LAQdYDDIRMPVNALRFSV-FNESMKVEVVVLPVFEGY 178
5678999999999555....5789****************8..78999******999...44339**********9998.89**********999999 PP
DUF1302 235 rlppv....GtFfstsdivgpgaeglllangnaaaltgsaagtvvpraadkepsdsgqwGlalrylaeel..tefglyylnyhsrlPvlsgasaavda 326
rlp ++ fs s i +g + + +++++a + + ++G+++++ l +f+l +l++ +++Pv++ ++ +
VIMSS562478 179 RLPVDprnpWNIFSLSPI-AQGMNIVWKEEAGKPAF----------------KVANIEYGARWST---TLsgIDFALAALHTWNKMPVIE----VQGI 252
998545455888999988.44444443333333222................3367889999999...3357*****************9....3444 PP
DUF1302 327 dnaayfleY.pediklyGaSfnttlgggtavagEvsYrpdaplqvntadllaaalaptaplpleyvrgyergdvlqaqlg..lga.dsltlvaEvavt 420
++ + + + + +G ++ +g ++ ++gE+++ d+ + + + + + e +++++++ g + a ++++++++ ++
VIMSS562478 253 VPTEIIVSPrYYRMGFVGGDLSVPVG-QFVFRGEAAFNIDKHFTY------------------KSHAEQEGFQTINWLAGadWYApGEWMISGQFSME 331
44444333335567779999999996.999999999999944443..................45778899999999999886557666666666666 PP
DUF1302 421 hvpdlpddegsdsaagnaagcaadgyatrfswGyrl.vleltynd.vlpgl 469
+ d + ++++ + ++ ++ +G +l + +ty d +g+
VIMSS562478 332 SIFRYRDFI-----SQRQHSTLITLNVSKKFFGSTLqLSDFTYYDlTGKGW 377
666666666.....3333566666666666777666556666666555555 PP
Or compare VIMSS562478 to CDD or PaperBLAST