VIMSS5672709 has 384 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.2e-58 182.8 0.0 4.6e-58 182.3 0.0 1.2 1 VIMSS5672709
Domain annotation for each sequence (and alignments):
>> VIMSS5672709
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 182.3 0.0 4.6e-58 4.6e-58 1 195 [. 167 371 .. 167 373 .. 0.97
Alignments for each domain:
== domain 1 score: 182.3 bits; conditional E-value: 4.6e-58
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeearaelk..lygsD 83
RgyRv +g+ap+ke++Aaa++ l++w +++pl+DP CGsGt+ IEaal+g niapg++r+f++e +++ ae+ea++e++ + g+D
VIMSS5672709 167 RGYRVQKGGAPIKENMAAAILALSNWFPDKPLVDPTCGSGTFCIEAALIGMNIAPGFNRSFAFEewswvdkdmvqqVRDDAEQEANYEIEldISGFD 263
9*************************************************************************************777777***** PP
UPF0020 84 ldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleera 180
+d r+++ a++Nae+ag++d i+f+q+ +++r +++ ++v+++npPYGerl + ka++ LY+e++++++ l++ ++ +++++++ +e ++++a
VIMSS5672709 264 IDGRMIEIAKSNAEEAGLSDVITFKQMRLQDFR-TDKINGVVISNPPYGERLLDDKAVDILYNEMGQTFAP-LKT--WSKFILTSDELFELKYGQKA 356
*********************************.7779*********************************.999..******************** PP
UPF0020 181 lrkvkeknvklglll 195
+k+k++n+ l+ +l
VIMSS5672709 357 DKKRKLYNGTLKVDL 371
*********998765 PP
Or compare VIMSS5672709 to CDD or PaperBLAST