PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS568689 to PF05656 (DUF805)

VIMSS568689 has 108 amino acids

Query:       DUF805  [M=107]
Accession:   PF05656.18
Description: Protein of unknown function (DUF805)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-22   64.9   2.5    5.4e-22   64.6   2.5    1.1  1  VIMSS568689  


Domain annotation for each sequence (and alignments):
>> VIMSS568689  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   2.5   5.4e-22   5.4e-22       2      99 ..      15     104 ..      14     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 5.4e-22
       DUF805   2 fsfsGRarRkeywwfvlvlvlvlivlllllallgasallgsalalllalllllpsllavtvRRlHDigrsgwwlllllipliglivllvllllpgtpg 99 
                  f+f+GR++R +yw +vlv+vl+ +vl  l + +        ++  l+a++ ++p  +a++vRR++D+gr+  w++++lip+ig ++ll++++ p+ + 
  VIMSS568689  15 FDFKGRTKRIDYWTIVLVNVLLGLVLNQLQGGF-------YSIYALFAVASIIPG-VAMQVRRIRDTGRQWQWIFIALIPFIGALWLLWIVIGPSAES 104
                  89***********************98887765.......568889*********.**************99**********9999999999988765 PP



Or compare VIMSS568689 to CDD or PaperBLAST