PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS5779041 to PF04304 (DUF454)

VIMSS5779041 has 155 amino acids

Query:       DUF454  [M=115]
Accession:   PF04304.17
Description: Protein of unknown function (DUF454)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-39  119.4   4.4      5e-39  119.1   4.4    1.0  1  VIMSS5779041  


Domain annotation for each sequence (and alignments):
>> VIMSS5779041  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   4.4     5e-39     5e-39       1     114 [.       2     116 ..       2     117 .. 0.93

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 5e-39
        DUF454   1 rllllvlGllslalGviGivlPlLPTtpFlLlAafcfarssprlerwLlehklfgpyirdwrekraiplkaKvialllmalsllislll.veslwvk 96 
                   r+l+++lG+l+++lGviG++lP++PTt Fl+lA+ cfarssp++e++Ll+h+++gp +r wre++a+++k K +a + mal ++++++  ++s+ + 
  VIMSS5779041   2 RWLWFALGWLMVGLGVIGALLPVMPTTIFLILAVGCFARSSPKFEQRLLAHPRYGPSLRLWREQGAVSRKGKAFASAGMALGFALFCWGaHPSWRLL 98 
                   89**************************************************************************************955567777 PP

        DUF454  97 illalvlllvllyllrlp 114
                   + ++l++++ + y+l++p
  VIMSS5779041  99 LGVGLFFAVSAGYVLSRP 116
                   788888888888888887 PP



Or compare VIMSS5779041 to CDD or PaperBLAST