VIMSS5783775 has 192 amino acids
Query: DUF308 [M=73]
Accession: PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5e-23 67.5 42.7 1.9e-15 43.2 18.5 3.0 3 VIMSS5783775
Domain annotation for each sequence (and alignments):
>> VIMSS5783775
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.2 18.5 1.9e-15 1.9e-15 1 73 [] 26 98 .. 26 98 .. 0.98
2 ! 35.3 15.4 5.5e-13 5.5e-13 2 72 .. 85 154 .. 84 155 .. 0.94
3 ! 6.7 2.8 0.00048 0.00048 12 44 .. 153 185 .. 152 192 .] 0.78
Alignments for each domain:
== domain 1 score: 43.2 bits; conditional E-value: 1.9e-15
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllllf 73
++++l +++Gi+++i+P+ +++++++++G+++++ +i++++aaf +r ++g++ + ll G +y+ +G+++++
VIMSS5783775 26 IIAVLGLLAGIICIINPFSSGVVVSVFLGIVFFACAITSIMAAFNSRISSGWSMLITLLAGFIYLFLGYIFIT 98
689*******************************************************************985 PP
== domain 2 score: 35.3 bits; conditional E-value: 5.5e-13
DUF308 2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
G +++ lG ++++ P+ +l l+++iG l++++Gi++lv +f++ k ++w+ +l+G l+++++++ll
VIMSS5783775 85 AGFIYLFLGYIFITDPLNGMLSLAFIIGYLFIFAGILRLVLGFKQIK-DSFYGWFNILVGFLDLVLAYFLL 154
799****************************************6666.88999****************98 PP
== domain 3 score: 6.7 bits; conditional E-value: 0.00048
DUF308 12 laliwPgaallalviliGvlllvsGivqlvaaf 44
l+ + P +++++++ liG+ l++s+i+ l a
VIMSS5783775 153 LLAFGPETSITLVMALIGIQLILSSITILSIAS 185
66778999*****************98774444 PP
Or compare VIMSS5783775 to CDD or PaperBLAST