PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS58481 to PF06568 (DUF1127)

VIMSS58481 has 84 amino acids

Query:       DUF1127  [M=37]
Accession:   PF06568.16
Description: Domain of unknown function (DUF1127)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-11   29.2   7.7      3e-11   29.2   7.7    1.7  2  VIMSS58481  


Domain annotation for each sequence (and alignments):
>> VIMSS58481  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2      0.58      0.58      12      15 ..      10      13 ..       7      13 .. 0.57
   2 !   29.2   7.7     3e-11     3e-11       1      37 []      30      66 ..      26      66 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.58
     DUF1127 12 Rrtr 15
                Rr+r
  VIMSS58481 10 RRQR 13
                4554 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 3e-11
     DUF1127  1 lraalrrWrryRrtrreLarLsDreLaDIGLsRsdir 37
                lr+ +r +r+++ trr+L +L   eL+DIGLs +++r
  VIMSS58481 30 LRRGYRLARQRQLTRRALLDLEAAELKDIGLSAEQAR 66
                3444555555555**********************97 PP



Or compare VIMSS58481 to CDD or PaperBLAST