VIMSS5934520 has 1244 amino acids
Query: Met_synt_B12 [M=273] Accession: PF02965.22 Description: Vitamin B12 dependent methionine synthase, activation domain Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-132 425.7 0.0 6.2e-132 425.1 0.0 1.3 1 VIMSS5934520 Domain annotation for each sequence (and alignments): >> VIMSS5934520 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 425.1 0.0 6.2e-132 6.2e-132 1 273 [] 952 1224 .. 952 1224 .. 1.00 Alignments for each domain: == domain 1 score: 425.1 bits; conditional E-value: 6.2e-132 Met_synt_B12 1 dleelveyidWtpffqawelkgkypkiledekvgeeakklfkdAqamLkkiieekllkakavvglfpansvgddievyadesrseelatlhtLrq 95 dl+el+eyidW+pff+awe+kg++p+il+++++ge+a+kl++dAq+mL+++i+ek+l+a++v+g+fpan+vgddievy+de+r+e+l+tlh Lrq VIMSS5934520 952 DLAELREYIDWQPFFNAWEMKGRFPDILNNPATGEAARKLYNDAQEMLDTLIREKWLTANGVIGFFPANAVGDDIEVYTDETRAEVLTTLHNLRQ 1046 699******************************************************************************************** PP Met_synt_B12 96 qaekeegepnlclaDfvapkesgvkDyiGlfavtaglgieelakefeaeeDdYsailvkalaDrLaeAfaellhekvrkelWgyakdeklsneel 190 q e+++g pn++l Df+apk++g +Dy+G+favtaglg ++++ ef+++ DdYsail++++aDrLaeAfae++h++vr+e+Wgy++de+l+ne+l VIMSS5934520 1047 QGEHRAGIPNRSLGDFIAPKDTGLADYVGAFAVTAGLGSQTKIVEFKEALDDYSAILLESIADRLAEAFAERMHQRVREEFWGYQPDEQLDNEAL 1141 *********************************************************************************************** PP Met_synt_B12 191 ikekYqGiRpApGYpacpdhsekktlfelldaeekigieLteslamtPaasvsGlyfahpeskyFavgkiekdqvedyakrkg 273 i e+Y GiRpApGYpacp+h+ek+tlfel+d+++++gieLtes+am+P a+vsG+yf+hp+s+yF vg++ +dqv+dyakrkg VIMSS5934520 1142 IGERYVGIRPAPGYPACPEHTEKTTLFELMDVTKRTGIELTESMAMWPGAAVSGWYFSHPQSQYFVVGRMAQDQVADYAKRKG 1224 *********************************************************************************97 PP
Or compare VIMSS5934520 to CDD or PaperBLAST