VIMSS59498 has 725 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-49 154.7 0.0 2.4e-46 144.0 0.0 2.4 2 VIMSS59498
Domain annotation for each sequence (and alignments):
>> VIMSS59498
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 144.0 0.0 2.4e-46 2.4e-46 1 194 [. 165 380 .. 165 383 .. 0.92
2 ! 8.3 0.0 9e-05 9e-05 73 130 .. 584 642 .. 554 685 .. 0.81
Alignments for each domain:
== domain 1 score: 144.0 bits; conditional E-value: 2.4e-46
UPF0020 1 RgyRvfngpapLketLAaalvrlagw....kdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear...aelk. 78
RgyR +g apLke+LAaa + +agw +g l+DPmCG Gt+l+Eaal++a+iap l re++++ l++ea+++a a +
VIMSS59498 165 RGYRLQQGAAPLKENLAAAVLIRAGWpkiaAEGGALADPMCGVGTFLVEAALMAADIAPNLKRERWGFsswlghvpalwrkLHEEAQQRAAaglA--Rp 261
9*************************5554579********************************************999877777777665543..13 PP
UPF0020 79 ...lygsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkal 172
++g + d+r++q a +N e+agv+d ++++q + a ++ ++g+ +++++npPYGerlg++ +l LY++++++l + + g +++ ++++ +l
VIMSS59498 262 plwIRGYEADPRLIQPACNNIERAGVADWVKIYQGELATFEprPDKGQTGLVICNPPYGERLGDEASLLYLYQNLGERLRQSCIG--WSAGVFTGAPEL 358
466*************************************9966777**********************************9999..************ PP
UPF0020 173 ekaleeralrkvkeknvklgll 194
k ++ r+ +++ n+ l +
VIMSS59498 359 GKRMGIRSHKQYAFWNGALACK 380
**********999999998886 PP
== domain 2 score: 8.3 bits; conditional E-value: 9e-05
UPF0020 73 araelklygsDldrrvvqgareNaekagvgdliefsqadaak.LrlkegevdvivtnpP 130
+ +Dl + +++ ar+N++ g +d+ ++ d+ + Lr+++g++++i +pP
VIMSS59498 584 RGGARSTTSVDLSKTYLDWARRNLSLNGFSDKQRLVHGDVMEwLREDDGQYELIFIDPP 642
3345558899*****************************9874779999*********9 PP
Or compare VIMSS59498 to CDD or PaperBLAST