VIMSS5973 has 363 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-43 134.4 0.0 2.7e-42 130.8 0.0 2.1 1 VIMSS5973
Domain annotation for each sequence (and alignments):
>> VIMSS5973
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 130.8 0.0 2.7e-42 2.7e-42 1 195 [. 190 356 .. 190 358 .. 0.96
Alignments for each domain:
== domain 1 score: 130.8 bits; conditional E-value: 2.7e-42
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekag 100
R +Rv+++pa+Lk+++A al++la +++ +++DP+CGsGti+IE al g + ++++++ +++++ga+ Na +ag
VIMSS5973 190 RPWRVYDHPAHLKSSIANALIELA--QPEGSFIDPFCGSGTIPIELALRGYEGK------------------------IICLEKYHKHLNGAKMNALAAG 263
78*********************8..6899******************999888........................9********************* PP
UPF0020 101 vgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkvkeknvklglll 195
v d+ief da+ L + ++vd v+n+PYG ++g+ ++ +LYs+fl+el++vl++ r v++t+e++a+e+a+ee+ ++ ++ + + +g+l+
VIMSS5973 264 VYDKIEFILGDATRLSEYLESVDFAVSNLPYGLKIGRRSMIPELYSKFLSELAKVLEK--RGVFITTEKNAIERAIEENGFKIIHHRLIGHGGLR 356
****************8888**************************************..***********************999999888876 PP
Or compare VIMSS5973 to CDD or PaperBLAST