PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS61598 to PF04367 (DUF502)

VIMSS61598 has 229 amino acids

Query:       DUF502  [M=107]
Accession:   PF04367.18
Description: Protein of unknown function (DUF502)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-19   56.5   0.0    4.3e-19   54.7   0.0    1.8  2  VIMSS61598  


Domain annotation for each sequence (and alignments):
>> VIMSS61598  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.11      0.11       7      28 ..      18      39 ..       5      54 .. 0.62
   2 !   54.7   0.0   4.3e-19   4.3e-19       2     107 .]      72     175 ..      71     175 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.11
      DUF502  7 illvGllarnllgrklleller 28
                ++++ l+++  l  ++++ll+r
  VIMSS61598 18 LVMLPLVLTLALLAWVVSLLNR 39
                3344444455555555555555 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 4.3e-19
      DUF502   2 lvlllillvGllarnllgrkllellerlleriPlvksiYssvkqlvetllgeekkkfkkvvlVe.iyprkglyalGFvtgedegelaekegeelvaVfv 99 
                 l+l++i+l+Gl ++  l r l +l++ +l+r Pl++++Y+ + ++v +l ++++ ++  +  V+ ++ ++g+ +l+++ + +  el+   g+ ++a++v
  VIMSS61598  72 LLLVAIYLLGLGVQLGLKRPLANLFDLTLRRTPLIGNLYNLADRFVGLLDKKQDADIAAMSPVWcFFGGDGAAVLALMPNPEAVELD---GRAHYAILV 167
                 6899***********************************************9************999***************88885...89******* PP

      DUF502 100 Ptspnpts 107
                 Pt+p p++
  VIMSS61598 168 PTAPIPVG 175
                 ****9975 PP



Or compare VIMSS61598 to CDD or PaperBLAST