PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS618836 to PF06611 (DUF1145)

VIMSS618836 has 90 amino acids

Query:       DUF1145  [M=58]
Accession:   PF06611.16
Description: Protein of unknown function (DUF1145)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.6e-31   91.8   8.0    1.4e-30   91.3   8.0    1.3  1  VIMSS618836  


Domain annotation for each sequence (and alignments):
>> VIMSS618836  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   8.0   1.4e-30   1.4e-30       1      58 []       1      58 [.       1      58 [. 0.98

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 1.4e-30
      DUF1145  1 mlinlGkllmlvvWlvllvNliqPfpgplnillniagivlvlmHllqlllfkaalkkk 58
                 m+inlG+llml+vW+++l+Nl+qP+p+pl +++++a+i++vlmH+lql+l+k++++k+
  VIMSS618836  1 MWINLGRLLMLGVWFFILLNLFQPYPKPLRYFIHVAMIFMVLMHGLQLVLLKSTQPKD 58
                 89*****************************************************996 PP



Or compare VIMSS618836 to CDD or PaperBLAST