VIMSS6201 has 332 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-33 102.2 0.0 1.3e-32 99.2 0.0 2.0 1 VIMSS6201
Domain annotation for each sequence (and alignments):
>> VIMSS6201
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 99.2 0.0 1.3e-32 1.3e-32 3 183 .. 159 310 .. 157 325 .. 0.90
Alignments for each domain:
== domain 1 score: 99.2 bits; conditional E-value: 1.3e-32
UPF0020 3 yRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvg 102
+R+f p +L +++A+a+v+l++++ + +lDP+ G+G++lIEa+l+g +++ g+D+ + +v+ga+ N+e++gv+
VIMSS6201 159 RRPFSRPIALPPRIARAMVNLTRAT--REILDPFMGTGGMLIEAGLMGLKVY--------------------------GIDIREDMVEGAKINLEYYGVK 230
8********************9865..67*********************99..........................********************** PP
UPF0020 103 dliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrk 183
d + +++ da+k++ + + +++i+t+pPYG +++ + ++LY+ l+++ +vl+g rl+++++++ + +++e ++
VIMSS6201 231 DYV-VKVGDATKIKeaFPGKTFEAIATDPPYGTSTTLPMDRDELYKRALESMYSVLEG--RLAIAFPSDFDALDVAETIGFKV 310
*98.5777******6645569************************************9..********999999888776655 PP
Or compare VIMSS6201 to CDD or PaperBLAST