VIMSS6213 has 380 amino acids
Query: DUF1297 [M=188]
Accession: PF06973.17
Description: Domain of unknown function (DUF1297)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.6e-86 272.2 0.0 1.3e-85 271.8 0.0 1.2 1 VIMSS6213
Domain annotation for each sequence (and alignments):
>> VIMSS6213
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 271.8 0.0 1.3e-85 1.3e-85 1 188 [] 189 380 .] 189 380 .] 0.99
Alignments for each domain:
== domain 1 score: 271.8 bits; conditional E-value: 1.3e-85
HHHHHHHHHHCTTSSSHHHHCCEEEEE---SEEEEEEEEEETTTTEEEEEEEEEEEEEECCCHCCS-HHHHHCCT-...---EEEEEEEEEEE-GGGHHH CS
DUF1297 1 dfkekleellekglieeedlkkasieeyvvGanfnlnyFysplkeevellgidrRyesnidglvrlpakqqlelel...epsyvvvGnipvvlREsllek 97
+fkek+e+l++ g+i++edl ka+ie+y++G fn+++Fysp+++e+ellgid+R+e+++dg+vrlpa qql+l + ep+y+v+G+ + +lREsllek
VIMSS6213 189 EFKEKSEKLIRLGVITREDLAKARIERYIIGPVFNFDFFYSPIDGEIELLGIDWRFETSLDGHVRLPAAQQLTLPEwqfEPEYTVCGHASSTLRESLLEK 288
79**********************************************************************9987778********************* PP
HHHHHHHHHHHHHHHSTT---EEEEEEEEE-TTS-EEEEEEESSB-GGGGGGTT.--CCHHHTTSS---HHHHHHHHHHHHHHCT-GGGCEE CS
DUF1297 98 vfelgekfveaakklvppGiiGpfcLqsvvtedlelvvfevsaRivggtnvyme.gspyskllfgepmsmGrriarEikeaiekdrleevvt 188
vf+++ek+vea+kk++ppGiiGpf+Lq++v++dl++++++v++R++ggtn++m+ g+py + l+++pms+Grria+Eik+aie d+le++vt
VIMSS6213 289 VFDMAEKYVEATKKYYPPGIIGPFTLQTAVDKDLNFYIYDVAPRTGGGTNIHMAmGHPYGNSLWRKPMSTGRRIALEIKRAIELDELEKIVT 380
*******************************************************************************************8 PP
Or compare VIMSS6213 to CDD or PaperBLAST