PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS621927 to PF11101 (DUF2884)

VIMSS621927 has 252 amino acids

Query:       DUF2884  [M=228]
Accession:   PF11101.12
Description: Protein of unknown function (DUF2884)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-24   73.0   2.9    1.9e-24   72.7   2.9    1.1  1  VIMSS621927  


Domain annotation for each sequence (and alignments):
>> VIMSS621927  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   2.9   1.9e-24   1.9e-24       1     216 [.      37     248 ..      37     251 .. 0.90

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 1.9e-24
      DUF2884   1 CevslnydvtveekklevsdagkekvrieedgqLfvdgkkvkLnadqqkaleqyseqvsqlvPevvalandgvklandavdevltsllgdaskafekl 98 
                  C+v+ + dv ++++++++  a + + +i+ dg+++ +gk ++L++ q++   +y++ +++ +P + + a+  ++ a   +d+v+ + lg++s+++++l
  VIMSS621927  37 CSVKPQDDVIISPQSVQIVGA-SGNLQISPDGDVTRNGKTLTLTDAQRQKAFRYQTALRKDLPWIDQGAQQRLEKARVSLDKVIVQQLGSSSNVRNRL 133
                  9*******************9.7889*********************************************************99999********** PP

      DUF2884  99 kekldevqakvkekfykdgdkfvlgadslskieeafdeefeqeieqlveesigsilaalgekmlegegds.meeleqrmeklgekieekveeqakele 195
                   ++ +++++++   + k+ d + ++++ ++++e++  e + q +  + ++s+    +++g k +++ g++ ++++  ++  l++ i+++ + q + ++
  VIMSS621927 134 TTLSEQLKQQMARIIEKRSDGLAFHHQAIAQVEKDGRELVQQSMGGVLQDSL----NEMGVKQATSSGNNpLQAILGNLGGLQQAIKNEWNDQEQDFQ 227
                  ***********************99999997777666666666666666665....455555566666667*************************** PP

      DUF2884 196 kkAdelCesleelaaleqqLq 216
                  + ++e+C ++++l+++  +L 
  VIMSS621927 228 QFGREVCGRVTTLEQQRIELL 248
                  **************9987776 PP



Or compare VIMSS621927 to CDD or PaperBLAST