PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS6581485 to PF10332 (DUF2418)

VIMSS6581485 has 484 amino acids

Query:       DUF2418  [M=96]
Accession:   PF10332.13
Description: Protein of unknown function (DUF2418)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-25   74.9   1.4    3.1e-25   74.9   1.4    1.9  2  VIMSS6581485  


Domain annotation for each sequence (and alignments):
>> VIMSS6581485  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.6      0.91      0.91      41      48 ..     147     151 ..     125     170 .. 0.46
   2 !   74.9   1.4   3.1e-25   3.1e-25       3      88 ..     230     314 ..     228     318 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.91
       DUF2418  41 tlllvvll 48 
                   +    +ll
  VIMSS6581485 147 I---FILL 151
                   1...1122 PP

  == domain 2  score: 74.9 bits;  conditional E-value: 3.1e-25
       DUF2418   3 vweLkvWdpskfslrlfvlfsPihvlllllllsvtvfktlllvvllsvqlylli.ekfeqlvkDkqiiskevlqEYnekfVkPrlnv 88 
                   +++L++W p++f+++lfv+fsP+++++l +  s+++f+ ++++v+++++l ++i ++f++ v+D+ i+s++ lqEY++k +  r+n+
  VIMSS6581485 230 FFQLRKWIPTNFMINLFVSFSPTAIVFLSF--SDVSFTSAIAIVFHQYILDYIItKRFQRSVDDDLILSSAALQEYEDKHIMARINQ 314
                   689***************************..*********************99****************************9985 PP



Or compare VIMSS6581485 to CDD or PaperBLAST