PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS6582490 to PF02656 (DUF202)

VIMSS6582490 has 828 amino acids

Query:       DUF202  [M=68]
Accession:   PF02656.20
Description: Domain of unknown function (DUF202)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-18   51.3   0.5      2e-17   49.7   0.1    1.9  2  VIMSS6582490  


Domain annotation for each sequence (and alignments):
>> VIMSS6582490  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.1     2e-17     2e-17       1      66 [.     686     751 ..     686     752 .. 0.97
   2 ?   -1.4   0.0      0.18      0.18      41      62 ..     769     790 ..     756     795 .. 0.65

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 2e-17
                   CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        DUF202   1 rdglAnERTfLaWlRtslalialgvallrffleggptalalllglilivlgiltlllalrrylrre 66 
                   +++lAnERTf  Wl  + +l +l + +++ +++++ ++la  +++++++l i+++l+++  y++r+
  VIMSS6582490 686 KVWLANERTFNRWLSVTSLLSVLTFSIYNSVKKAEYPTLANYMAYVYFGLTIFCALWSYSIYMKRV 751
                   79*************************************************************986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.18
                   HHHHHHHHHHHHHHHHHHHHHH CS
        DUF202  41 lllglilivlgiltlllalrry 62 
                    l++++l+v+ ++ +++a+r+ 
  VIMSS6582490 769 VLVSIVLFVTLVVNFVMAFRNA 790
                   5567777777777777777665 PP



Or compare VIMSS6582490 to CDD or PaperBLAST