VIMSS661951 has 675 amino acids
Query: ABC_transp_aux [M=288]
Accession: PF09822.16
Description: ABC-type uncharacterized transport system
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.3e-11 28.3 1.2 2.7e-09 22.7 0.7 2.9 2 VIMSS661951
Domain annotation for each sequence (and alignments):
>> VIMSS661951
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.6 0.0 0.28 0.28 22 41 .. 238 256 .. 235 279 .. 0.79
2 ! 22.7 0.7 2.7e-09 2.7e-09 2 263 .. 318 598 .. 317 618 .. 0.57
Alignments for each domain:
== domain 1 score: -3.6 bits; conditional E-value: 0.28
ABC_transp_aux 22 leelseqydveevdldsvee 41
l++ls q++v+ ++ d ve
VIMSS661951 238 LKSLSPQFKVRFINAD-VEL 256
7899999999999988.554 PP
== domain 2 score: 22.7 bits; conditional E-value: 2.7e-09
ABC_transp_aux 2 pkvgvltghgels.......dspewsfleelseq..ydveevdldsv..eeipeeldvLviakPkedlseeelyaldqflmnG.Gkllvfvdpva 84
+++++ +++ge+ +++ ++l+ + ++v+ + +++ + ipe+ dvL+ia+P+ ++s+e++ l +f+++ Gk+++ +dp
VIMSS661951 318 KNIYFTQSNGERFspifqnlPNEKVGILSNSLSFlnFKVKGLGIAEGwpTRIPEDADVLMIAGPTVAFSKEAQSSLIDFVEKKkGKIFITIDPKG 412
67888888888887887766444444444444444777777777754225678***************************97526********22 PP
ABC_transp_aux 85 veldslseagpalprdsnLedlLekyGvrinpdlvldsnnaaiplatgngggetqiqyppwlflplsnlnsdhpitagl....dalllafassid 175
++n+ lLek G ++ ++ + + ++g+ g l +++++hpi + l + ++fa+ +
VIMSS661951 413 ---------------TENFGWLLEKSGYEFVKGPISQ--------VQGQAGMV------------LAKSFKKHPIEEALtrkdTGTMFPFAGYFV 472
...............7777777777776666655555........44432222............223455555555554444677777777777 PP
ABC_transp_aux 176 t.l....knagvkktpLlsssdqsglvsaptsislsdpepdpkdfegg...skplavllegkftsafanrpk..........elk.......... 242
+ + ++++++++pL++s ++ l + ++ +l+ + + ++ g + +l v+ e sa +n ++ +
VIMSS661951 473 PqTnqgpGGKNLEAYPLMESGGDAILDKN-NNGKLD-AGEERRNVILGmvlKTVLKVQKE----SAAENPKTdeskqglqkdL-Nstglnsdqev 560
75567776777777777777777766665.222222.11222222222122222233333....3333333223224444430.13333344444 PP
ABC_transp_aux 243 .................ssakeskiivvgDgdvlsnqv 263
s++e+++++++ + ++++q+
VIMSS661951 561 vsqnseiqkdisqntnvDSKEEGRVVIFSGTSWITDQF 598
45555555666666666555666666666666666666 PP
Or compare VIMSS661951 to CDD or PaperBLAST