PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS6631564 to PF20238 (BIM1-like_dom)

VIMSS6631564 has 266 amino acids

Query:       BIM1-like_dom  [M=140]
Accession:   PF20238.2
Description: Copper acquisition factor BIM1-like
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-26   79.1   0.9    3.6e-26   78.5   0.9    1.3  1  VIMSS6631564  


Domain annotation for each sequence (and alignments):
>> VIMSS6631564  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.9   3.6e-26   3.6e-26       4     139 ..      36     167 ..      33     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 3.6e-26
  BIM1-like_dom   4 fallyPpsrgfdedkentaPCGgfasvgnrtefpltggavlllsshpsanvavrlslgnptsnsdfntlleppvvqetgaGhfClpkvdlpss... 96 
                    + +l P++rg+d++++ t+PCGgf+ + n t + l+ g  +++s ++ +nv +++s++   s  d+++ ++ +++++ +aG++Cl + +l ++   
   VIMSS6631564  36 LGFLEPTPRGWDYSTMGTSPCGGFT-TVNQTYYGLSTGMEFQVS-NDVSNVVISYSTS---S--DMSNAVTLATIESATAGTMCLDGENLFEDegf 124
                    67899*******************5.889******776666666.6666666666533...4..77777888999999*********887777799 PP

  BIM1-like_dom  97 a.Gtnatlqvvysge...galYqCadvtfvesasaksassstCfnst 139
                    + G++ tlqv y++e   +  YqCad++f++++      s tC+n++
   VIMSS6631564 125 NfGDDITLQVFYHDEvteQDGYQCADISFTSDH----VMSVTCSNTS 167
                    66**********887765358*********333....3699****97 PP



Or compare VIMSS6631564 to CDD or PaperBLAST