VIMSS6821238 has 535 amino acids
Query: RACo_C_ter [M=261]
Accession: PF14574.11
Description: C-terminal domain of RACo the ASKHA domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.8e-98 313.1 0.2 2e-97 311.4 0.0 1.9 3 VIMSS6821238
Domain annotation for each sequence (and alignments):
>> VIMSS6821238
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.1 0.0 0.18 0.18 43 70 .. 9 36 .. 8 57 .. 0.78
2 ? -1.6 0.1 0.062 0.062 70 118 .. 105 158 .. 69 182 .. 0.64
3 ! 311.4 0.0 2e-97 2e-97 1 261 [] 276 524 .. 276 524 .. 0.99
Alignments for each domain:
== domain 1 score: -3.1 bits; conditional E-value: 0.18
RACo_C_ter 43 rAapgAierveidpetlevelkvignek 70
+A + ++++e+dp t ++++k++++++
VIMSS6821238 9 LADQRVVSDFELDPLTRKISIKILQGHE 36
5788899999999999999999997643 PP
== domain 2 score: -1.6 bits; conditional E-value: 0.062
RACo_C_ter 70 k..........pkGicGsGiidliaelleagiidkkgklnkelkserireeeeteeyvl 118
+ + i + ++ + ++++ ii k n + i+ +++ + ++
VIMSS6821238 105 PgdhtdahvglAIDIGTTTVVVYLVNMVNGDIIAKASDYNGQ-----IKLGDDILSRIM 158
344444444445556666666666677777777666666443.....445555555555 PP
== domain 3 score: 311.4 bits; conditional E-value: 2e-97
RACo_C_ter 1 elslliDiGTNaEivlgnkdwllaasaaaGPAlEGgeikcGmrAapgAierveidpetlevelkvignekpkGicGsGiidliaelleagiidkkgk 97
e+sll+DiGTN+E +lgn++wl+ +++aaGPAlEGg ++G+rA++gA+++v+id+e+ +v++++i+n +++GicGsG+id +ael+++g+i++ +
VIMSS6821238 276 EVSLLVDIGTNGEFILGNQEWLVGCAGAAGPALEGGVTEWGIRAEQGAVDQVSIDSEH-HVRYTTIDNAPARGICGSGLIDSLAELFLNGLINRAAR 371
789******************************************************9.************************************** PP
RACo_C_ter 98 lnkelkserireeeeteeyvlvlaeesetekdivitekDidelirakaAiyagietLleevglevedidkvylaGafGsyidiekAitiGllPdlel 194
+ ++++e++++v+a es+t+k+i+i++kDi++l+r+k+A++a++e+L+e+vg+++e+i k+y aGafG+y+ ie+AitiGl+Pdl++
VIMSS6821238 372 F-----------TDGRERFTIVPAGESATGKEIFISQKDINSLMRTKGAVNAALEVLMESVGCQWEEIAKFYAAGAFGQYLPIESAITIGLYPDLPR 457
*...........567899******************************************************************************* PP
RACo_C_ter 195 ekvkqvGNtslagAraallsreareeleeiarkityielavekeFmdefvaalflphtdlelfpsvk 261
e++ +GN+s++gAr++lls+++r+e+eeia kity+e++++++Fmd++ + flpht+++lfpsvk
VIMSS6821238 458 EQMLRLGNSSGEGARQVLLSHSKRQEIEEIAGKITYFEMNASSSFMDKYGGSRFLPHTNMDLFPSVK 524
****************************************************************986 PP
Or compare VIMSS6821238 to CDD or PaperBLAST