VIMSS6872875 has 359 amino acids
Query: PDH_N [M=154]
Accession: PF02153.21
Description: Prephenate dehydrogenase, nucleotide-binding domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.3e-22 63.5 0.0 1.8e-21 62.4 0.0 1.5 2 VIMSS6872875
Domain annotation for each sequence (and alignments):
>> VIMSS6872875
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.5 0.0 0.36 0.36 114 147 .. 16 49 .. 14 51 .. 0.76
2 ! 62.4 0.0 1.8e-21 1.8e-21 41 153 .. 119 220 .. 108 221 .. 0.93
Alignments for each domain:
== domain 1 score: -3.5 bits; conditional E-value: 0.36
PDH_N 114 aareelfenavviLtPtektdkealelvkellee 147
++ l+ +++ L ++ + e+l+ v+ ll++
VIMSS6872875 16 QSLIALLSDRISLLASEQPSLDEQLASVAPLLAQ 49
5666788888888888888888999999888876 PP
== domain 2 score: 62.4 bits; conditional E-value: 1.8e-21
PDH_N 41 eavkeadivllavPvevilevlkelaphlkedalitDvgsvKekvvkelekllkgksfvgghPmaGteksGvdaareelfenavviLtPtektdkea 137
+ +++a++vl++vP+e + +v+k a+ l + ++D++s+K+++ +++ ++ + + g hPm+G+ + ++f +++v+ +P ++d
VIMSS6872875 119 QLLSQAELVLVSVPIEHTVDVIKRAAKYLASNTALCDITSIKTQPTQAMLEHHC-GPVMGLHPMFGP--------NIKSFLGQKVVVCPGRNDD--S 204
46899*************************************************.899*********........99**************776..8 PP
PDH_N 138 lelvkelleevgarvi 153
++ + ++l+ g+ +i
VIMSS6872875 205 FQWLLDFLKSKGGELI 220
9999999999999876 PP
Or compare VIMSS6872875 to CDD or PaperBLAST