VIMSS72295 has 319 amino acids
Query: LpxR [M=322]
Accession: PF09982.13
Description: Outer membrane protein LpxR
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.9e-44 135.9 3.8 1.7e-43 134.9 3.8 1.5 1 VIMSS72295
Domain annotation for each sequence (and alignments):
>> VIMSS72295
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 134.9 3.8 1.7e-43 1.7e-43 3 316 .. 11 315 .. 9 319 .] 0.84
Alignments for each domain:
== domain 1 score: 134.9 bits; conditional E-value: 1.7e-43
LpxR 3 lallllaspalAqe......keekstlslqleNDlfage.gsDryYTnGlrlswlsaeeekkwlrelarllkplsksaesekrlglslgQkiyTP..sd 92
+al++++++a+A++ +++++ ++ + ND+++++ ++ ++Y++Gl+l + ++ ++ ++l+l ++Q iy P s+
VIMSS72295 11 IALSFTTCSAIANSlalslaNDDAGKFQP-ILNDIYGNKhENRDDYSQGLFLGYSHDISDS--------------------SQLSLHIAQDIYSPsgSN 88
55555555566666666654445555554.559**9999666778********97766554....................4699**********6666 PP
LpxR 93 ieaedpdpdDrPYAGylylelglqsetkde.ldslelslGvvGpaslaeqvQklvHkligseepkGWdnQlknepavnlsyerekrllekeadsgleld 190
+ ++ Dr + +y ++++ +s +d + +l+ ++GvvGp++++++vQ++ H++ig e+ + Wd Q++n ++ ++ ++ + + g ++
VIMSS72295 89 KRHNTAVTGDRAFSAYTHTGIEWNSLANDWiRYRLGTDIGVVGPDAGGQKVQNKAHEIIGAEKYHAWDDQIENRYGYTVKG--MLSMTPSMDILGANVG 185
77777788**********************899*****************************************9976655..4445558888999999 PP
LpxR 191 liphagaalGnvkteasagltlRlGknLpkdfgsa....rirpgseafapskskfgwyvFagaegryvarditLdGntfr.dspsvdkeplvadlelGv 284
l p+++a Gn++++++ g+t+ +G+ +k f+s+ ++p + ++++s+f++ +Fag+e r v r++tL+G+t + ++++v++++ v ++++G+
VIMSS72295 186 LYPEVSAVTGNLFQYVAYGATIAIGN--DKTFNSDngfgLLAPRGLMHMSDTSGFKYKIFAGMERRDVNRNYTLEGKTIQtKQTTVSLNKTVDEYQVGA 282
*************************9..89999986654557733444447*****************************7777*************** PP
LpxR 285 alaykrvrlsytlvfrtkefeeqeead.qfGsl 316
+ y v ++++++ t+ef++ ++ + G++
VIMSS72295 283 TIGYAPVAFTLAFNKVTSEFKTGDDYSfINGAI 315
*********************997665455555 PP
Or compare VIMSS72295 to CDD or PaperBLAST