VIMSS737167 has 430 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-48 151.6 0.0 1e-42 132.2 0.0 2.3 2 VIMSS737167
Domain annotation for each sequence (and alignments):
>> VIMSS737167
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 132.2 0.0 1e-42 1e-42 1 137 [. 174 327 .. 174 332 .. 0.90
2 ! 17.1 0.0 1.8e-07 1.8e-07 134 195 .. 351 410 .. 349 412 .. 0.91
Alignments for each domain:
== domain 1 score: 132.2 bits; conditional E-value: 1e-42
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye...............lkaeaeeear...aelkly 80
Rg+R ++g apL+e+LAa+++rlagw++g+pl+DPmCGsGt+ Eaa+++ +apg r+f +e + a+++ar ++l ++
VIMSS737167 174 RGWRLDKGAAPLRENLAAGILRLAGWTPGTPLYDPMCGSGTFVAEAAQIALGVAPGVERRFGFEklkqyditawqtlkvAAMDAKRAARgkrDDLLIF 271
9**************************************************************************988733444444444337777** PP
UPF0020 81 gsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgs 137
gsD+ ++++ar N+e+agv l+ ++q da++++ + + +vivtnpPYGer++
VIMSS737167 272 GSDISGDMLEKARANLERAGVPSLW-LKQIDARNMTPPAAAPGVIVTNPPYGERIEV 327
**********************999.5788******888899************985 PP
== domain 2 score: 17.1 bits; conditional E-value: 1.8e-07
UPF0020 134 rlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkvkeknvklglll 195
r+++ +++++++++lk++++g + +++++++++l l+ r+++k++++n+ l+++l
VIMSS737167 351 RTHADSPDSEFFRALGDALKQRFAG--WQAFMLSSDRTLPGQLRLRESAKTPLFNGALECRL 410
66666667899**************..*******************************9975 PP
Or compare VIMSS737167 to CDD or PaperBLAST