PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS774959 to PF06295 (DUF1043)

VIMSS774959 has 145 amino acids

Query:       DUF1043  [M=123]
Accession:   PF06295.16
Description: Protein of unknown function (DUF1043)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-51  159.6   0.2    1.9e-51  159.4   0.2    1.0  1  VIMSS774959  


Domain annotation for each sequence (and alignments):
>> VIMSS774959  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.2   1.9e-51   1.9e-51       1     122 [.       6     128 ..       6     129 .. 0.97

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 1.9e-51
      DUF1043   1 vliglvvGliiGalvlrltnsklkkqkklekelekakaeleeyrqeledHFarsaelLeklakdyqkLyqhlaksseeLlpeltekdnpvkkkleekk 98 
                  +li +v+G+i+Ga+++rl+n++lk+qk+l+k+l+k+k ele+yrqel+dHFarsaelL+++akdy+kLy+h+ak+s+eL+p+l+e+dnp+++++++ +
  VIMSS774959   6 ALIIFVAGAIVGAFAARLGNKSLKQQKELKKDLDKSKYELEQYRQELVDHFARSAELLDNVAKDYSKLYEHMAKTSTELMPNLPEQDNPFARRISTLE 103
                  68**********************************************************************************************99 PP

      DUF1043  99 aekee.eeaeeqPrDYsegasgllk 122
                  a k+  e+ ++qPrDY++ga+gl++
  VIMSS774959 104 AVKQPaEPLHDQPRDYASGATGLFN 128
                  988876889**************98 PP



Or compare VIMSS774959 to CDD or PaperBLAST