PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS7774255 to PF11738 (DUF3298)

VIMSS7774255 has 248 amino acids

Query:       DUF3298  [M=83]
Accession:   PF11738.12
Description: Protein of unknown function (DUF3298)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-13   37.3   0.0      2e-12   34.2   0.0    2.1  2  VIMSS7774255  


Domain annotation for each sequence (and alignments):
>> VIMSS7774255  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.059     0.059      10      41 ..      62      96 ..      58     113 .. 0.73
   2 !   34.2   0.0     2e-12     2e-12       2      83 .]     157     233 ..     156     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.059
       DUF3298 10 ylealselikkqlkkqaeeqeleeyeeleee...f 41
                  ++++l++li++ l +++ ++++++ +++ +     
  VIMSS7774255 62 KEPKLDALIEQRLLEMTSTSPNDPLPTSLDTyreQ 96
                  5689999******9999999988888877765533 PP

  == domain 2  score: 34.2 bits;  conditional E-value: 2e-12
       DUF3298   2 DlFkpgsdylealselikkqlkkqaeeqeleeyeeleee.fdaddisaydnFyltddglvfyfnpYeiaPyaaGaieftiPys 83 
                   D++ pg  +++a++++++ +++++      ++  +le e  ++  ++++ n +lt  g+++ ++   iaPya G +e++iPys
  VIMSS7774255 157 DMLLPG--KEDAFWKAAQVAHNSWL----ISTRLSLEPEyVKTYPFQKTPNVALTYGGVILKYPTSTIAPYALGHVELQIPYS 233
                   777888..88888899998888888....55555555556899***************************************7 PP



Or compare VIMSS7774255 to CDD or PaperBLAST