VIMSS7780276 has 388 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-59 186.5 0.0 3.6e-59 185.9 0.0 1.3 1 VIMSS7780276
Domain annotation for each sequence (and alignments):
>> VIMSS7780276
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 185.9 0.0 3.6e-59 3.6e-59 1 195 [. 167 371 .. 167 383 .. 0.97
Alignments for each domain:
== domain 1 score: 185.9 bits; conditional E-value: 3.6e-59
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeearaelk..lygsD 83
RgyRv +g+ap+ke++Aaa+++l++w +++pl+DP CGsGt+ IEaa+l++niapgl r+f++e l++ea+++++++l + gsD
VIMSS7780276 167 RGYRVEKGGAPIKENMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAAMLAKNIAPGLKRSFAFEewpwvedqlvvaLRKEAQASIKTDLVldITGSD 263
9***************************************************************************9*******99777778***** PP
UPF0020 84 ldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleera 180
+d+r+++ a++Na +agv++ i f+q+ +++Lr +++ ++vi++npPYGerl + +a+ +LY+e++++++ l++ ++ +++++++ +e+ ++++a
VIMSS7780276 264 IDARMIEIAKKNAFAAGVEQDIVFKQMRVQDLR-TDKINGVIISNPPYGERLLDDEAIVTLYREMGETFEP-LKT--WSKFILTSDELFETRFGQQA 356
*********************************.7779********************************9.999..******************** PP
UPF0020 181 lrkvkeknvklglll 195
+k+k++n+ l+ +l
VIMSS7780276 357 DKKRKLYNGTLKVDL 371
*********998765 PP
Or compare VIMSS7780276 to CDD or PaperBLAST