PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS82571 to PF13810 (DUF4185)

VIMSS82571 has 333 amino acids

Query:       DUF4185  [M=309]
Accession:   PF13810.10
Description: Domain of unknown function (DUF4185)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.9e-121  390.5   2.2   3.2e-121  390.3   2.2    1.0  1  VIMSS82571  


Domain annotation for each sequence (and alignments):
>> VIMSS82571  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  390.3   2.2  3.2e-121  3.2e-121       1     309 []       5     329 ..       5     329 .. 0.98

  Alignments for each domain:
  == domain 1  score: 390.3 bits;  conditional E-value: 3.2e-121
     DUF4185   1 espnrtdkrfgvsgTDLGimwdngkg...rvlvvFGDtfgkgavgsgagdWrsnvllrstdrdlsdgl.........tfdgavgdeggaakqllpseki 87 
                 +spn+t +rfg+sgTDLGi+wdng+    +vl++FGD+fg ++v+++  + r+n+l+rs+++dls+g+         +++g+++++ g akq++++ ++
  VIMSS82571   5 NSPNKTLQRFGISGTDLGIPWDNGDPtnhQVLMAFGDSFGYCSVKGQ--QRRYNILFRSSNQDLSHGIriadgvpndKYSGSPVWTTGLAKQVVNTIHR 101
                 69********************9976777***********9999998..9******************9999999999999999*************** PP

     DUF4185  88 agvevtviPtagiavggrqYlsymsvrewgepgewttnysaiakSdDngetWekvpaarrtnsdaqllg....egnenfqmaafvk.ddgyvYvfgtpn 181
                 a++e+++iPt++i++g++qY++yms+++wg++gewttnysaia+S Dng++W ++p+++rt+s + ++g    +gn+nfqm+af++ +dgy+Y fgtp+
  VIMSS82571 102 APHETGIIPTTAISIGKTQYMNYMSIKKWGRDGEWTTNYSAIARSIDNGQSWGTYPGTIRTASPDAIPGthfvPGNQNFQMGAFMRgNDGYLYSFGTPS 200
                 ****************************************************************8888889999************9************ PP

     DUF4185 182 gRsgaayLaRvpeadildlsayeywdgggWskkeea.atpvlagpvgElSvryneylgkwvllyldeekesivlrtadspegpwsaaktlvssaevpq. 278
                 gRsgaayLaRvp++ ++dls+y+yw+ g+W++++++ atp+++gpvgE+S++yn+yl+++++ly +  ++++v rta++p+gpws+++ lvss ++p+ 
  VIMSS82571 201 GRSGAAYLARVPQNLVPDLSKYQYWN-GNWVPNNPGaATPLFSGPVGEMSAQYNDYLKQYIILYSNGDSNDVVARTAPAPQGPWSPEQPLVSSFQMPGg 298
                 *************************7.77*********************************************************************9 PP

     DUF4185 279 lYggyihPwstgkdlyflvSqWntYnvmlmr 309
                 +Y+++ihPws+g+dlyf++S W++Y+v+lm+
  VIMSS82571 299 IYAPMIHPWSSGRDLYFNLSLWSAYDVVLMH 329
                 ******************************7 PP



Or compare VIMSS82571 to CDD or PaperBLAST