PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS846307 to PF07853 (DUF1648)

VIMSS846307 has 221 amino acids

Query:       DUF1648  [M=49]
Accession:   PF07853.16
Description: Domain of unknown function (DUF1648)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-21   61.1   1.0    3.1e-21   61.1   1.0    3.1  3  VIMSS846307  


Domain annotation for each sequence (and alignments):
>> VIMSS846307  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   1.0   3.1e-21   3.1e-21       2      49 .]      14      61 ..      13      61 .. 0.97
   2 ?   -3.3   0.4      0.41      0.41       3      11 ..     120     128 ..     118     133 .. 0.51
   3 ?    0.9   0.2      0.02      0.02       6      17 ..     197     208 ..     192     215 .. 0.57

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 3.1e-21
      DUF1648  2 lilltlvlglilypkLPdqiPtHfnasGepDgygsKafglfllPllll 49
                 +il+++v gli +p+ Pd  P+H++++G +D+yg K++gl+l+Pl++l
  VIMSS846307 14 IILAMFVTGLITWPNAPDLLPVHWGIDGRVDRYGGKFEGLLLMPLICL 61
                 89*******************************************986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.41
      DUF1648   3 illtlvlgl 11 
                  il+++ l l
  VIMSS846307 120 ILIMVGLLL 128
                  444444444 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.02
      DUF1648   6 tlvlglilypkL 17 
                    ++gl++y+ L
  VIMSS846307 197 LGIIGLFVYSYL 208
                  555555555544 PP



Or compare VIMSS846307 to CDD or PaperBLAST