PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS859277 to PF04284 (DUF441)

VIMSS859277 has 150 amino acids

Query:       DUF441  [M=139]
Accession:   PF04284.17
Description: Protein of unknown function (DUF441)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-47  146.6  23.5    2.8e-47  146.4  23.5    1.0  1  VIMSS859277  


Domain annotation for each sequence (and alignments):
>> VIMSS859277  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.4  23.5   2.8e-47   2.8e-47       1     139 []      10     147 ..      10     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: 146.4 bits;  conditional E-value: 2.8e-47
       DUF441   1 llLlvllllgllaknkslviaalvllllkllklekllpllekkglelGviiltiavLvPiatgkiklkelleslkslkgllallvgilvallagkGve 98 
                  llL++ll+lg+l++n++++i+a+vll+++++ l++ +pllek+g+++G+iilti+vL+P+++gki+l +l   l s+k+ l+++vg+lva+lagkGv 
  VIMSS859277  10 LLLVILLILGVLSNNSAITISAAVLLIMQQTFLSSHIPLLEKYGVKIGIIILTIGVLSPLVSGKIQLPDLSGFL-SWKMALSIAVGVLVAWLAGKGVP 106
                  79********************************************************************8876.*********************** PP

       DUF441  99 llkedpevvvglvlGtilgvvllkGvpvGPliaagilalll 139
                  l+ e+p +v+gl++Gti+gv++l+G+pvGPliaagilalll
  VIMSS859277 107 LMGEQPILVTGLLIGTIIGVAFLGGIPVGPLIAAGILALLL 147
                  **************************************986 PP



Or compare VIMSS859277 to CDD or PaperBLAST