VIMSS879487 has 1239 amino acids
Query: Met_synt_B12 [M=273]
Accession: PF02965.21
Description: Vitamin B12 dependent methionine synthase, activation domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.2e-124 398.5 0.0 1.3e-123 397.9 0.0 1.3 1 VIMSS879487
Domain annotation for each sequence (and alignments):
>> VIMSS879487
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 397.9 0.0 1.3e-123 1.3e-123 1 273 [] 941 1221 .. 941 1221 .. 0.95
Alignments for each domain:
== domain 1 score: 397.9 bits; conditional E-value: 1.3e-123
Met_synt_B12 1 dleelveyidWtpffqaWelkgkypkiledekvgeeakklfkdAqamLkkiieekllkakavvglfpAnseg.ddievyadesrseelatlhtLr 94
dl+ l+eyidWtpff +W+l+gkyp+il+de+vge+a++l++dA++mL+k+i+ekl++a+av+g++pAn+++ dd+evy d+ + +a+lh+Lr
VIMSS879487 941 DLNVLAEYIDWTPFFISWDLAGKYPRILTDEVVGEAATALYADATQMLRKLIDEKLISARAVFGFWPANQVNdDDLEVYGDDG--KPQAKLHHLR 1033
58899*****************************************************************96388****8888..5569****** PP
Met_synt_B12 95 qqaekeegkpnlclaDfvapkesgvkDyiGlFavtaglgieelakefeaekddYsailvkaladrLaeAfaellhekvrkelWgyakdeklsnee 189
qq+ k++gkpn++laDfvapk+sg +DyiG+F++tag+g+ee+ak+++++ ddY++i+vkaladrLaeA+ae+lh++vrke+Wgyakde+l+ne+
VIMSS879487 1034 QQTIKPDGKPNFSLADFVAPKDSGLTDYIGGFITTAGIGAEEVAKAYQDKGDDYNSIMVKALADRLAEACAEWLHQQVRKEYWGYAKDEALDNEA 1128
*********************************************************************************************** PP
Met_synt_B12 190 likekYqgiRpApGYpacpdhtekktlfelld.........aeekigieLteslamtPaasvsGlyfahpearyFavgkiekdqvedyakrkg 273
like+Y giRpApGYpacpdhtek tlf lld + k g+ Lte++am Paa+vsG+yfahp+a+yFavgk++kdqve+y++rkg
VIMSS879487 1129 LIKEQYMGIRPAPGYPACPDHTEKGTLFALLDplpegtpehTPGKSGVFLTEHYAMFPAAAVSGWYFAHPQAQYFAVGKVDKDQVESYTARKG 1221
*******************************843333222234579*********************************************97 PP
Or compare VIMSS879487 to CDD or PaperBLAST