VIMSS9009 has 381 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-78 248.3 0.0 3.5e-78 247.9 0.0 1.1 1 VIMSS9009
Domain annotation for each sequence (and alignments):
>> VIMSS9009
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 247.9 0.0 3.5e-78 3.5e-78 1 196 [. 166 374 .. 166 375 .. 0.97
Alignments for each domain:
== domain 1 score: 247.9 bits; conditional E-value: 3.5e-78
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..........lkaeaeeear...aelklygsDldrr 87
RgyRvfn+pa+L++t+A++lv+l++wkd+e+llDPmCGsGti+IE+al+++ni+pg++re++y l++++++e+ + +k++g+D++++
VIMSS9009 166 RGYRVFNHPAHLNATIASSLVYLSDWKDDEMLLDPMCGSGTIPIEGALMKRNIPPGKFRENKYGfkfidifgyeLLDKIKKEIVenkNIYKIIGLDKNQK 265
9**************************************************************99*********88999888776668899********* PP
UPF0020 88 vvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkvkek 187
+++ga++Na++a+v d+ief + da+kL++k +e dvi++npPYG+r+gsk++++kLY+efl+++k++++g++rl+++tae+k++++a+++++++ ++e+
VIMSS9009 266 YLDGAKDNAKNAEVLDTIEFICGDATKLHEKFNESDVIIANPPYGIRIGSKRSVKKLYDEFLSSAKEIMHGSSRLIVITAEDKMFKDAIAKNNFEVKEEF 365
**************************************************************************************************** PP
UPF0020 188 nvklglllk 196
nv++g+l++
VIMSS9009 366 NVMFGGLMT 374
*****9986 PP
Or compare VIMSS9009 to CDD or PaperBLAST