VIMSS92501 has 702 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.7e-73 230.2 0.0 3.3e-68 215.4 0.0 2.3 2 VIMSS92501
Domain annotation for each sequence (and alignments):
>> VIMSS92501
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 215.4 0.0 3.3e-68 3.3e-68 1 196 [. 162 375 .. 162 376 .. 0.97
2 ! 12.6 0.0 4.5e-06 4.5e-06 79 169 .. 564 657 .. 532 668 .. 0.83
Alignments for each domain:
== domain 1 score: 215.4 bits; conditional E-value: 3.3e-68
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear...aelk..lyg 81
RgyR+ +g ap+ketLAaa+v+++gw++g+pllDPmCGsGt+lIEaa+l++++apgl+r ++++ +kaea+++ar ae++ +yg
VIMSS92501 162 RGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFsgwaqhdeaiwqeVKAEAQTRARkglAEYSshFYG 260
9**************************************************************************999999999999888566577*** PP
UPF0020 82 sDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekalee 178
sD+d+rv+q+ar+Na+ ag+g+li+f+++d+a+L+ l+++ ++++++npPYGerl+s++al +L+s ++r +k+++ g ++++l++++ +l ++l+
VIMSS92501 261 SDSDARVIQRARTNARLAGIGELITFEVKDVAQLTnpLPKEPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGG--WNLSLFSASPDLLSCLQL 357
***********************************999999************************************99..****************** PP
UPF0020 179 ralrkvkeknvklglllk 196
ra +++k+kn++l++++k
VIMSS92501 358 RADKQYKAKNGPLDCVQK 375
***************997 PP
== domain 2 score: 12.6 bits; conditional E-value: 4.5e-06
UPF0020 79 lygsDldrrvvqgareNaekagvgdlie.fsqada.akLrlkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvlltaen 169
+D+ r +++ a++N++ g++++ + + qad a Lr++++++d+i +pP +r++++ ++++ + ++++ lkr lr gg +++++n
VIMSS92501 564 TTTVDMSRTYLEWAERNLRLNGLTGRAHrLIQADClAWLREANEQFDLIFIDPPtfsNSKRMEDAFDVQRDHLALMKDLKRLLRAGG--TIMFSNN 657
5679******************9988653677776256889999**********6444689999999*****************944..4444444 PP
Or compare VIMSS92501 to CDD or PaperBLAST