VIMSS938204 has 366 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.7e-18 51.4 0.0 1.8e-15 43.2 0.0 3.5 2 VIMSS938204
Domain annotation for each sequence (and alignments):
>> VIMSS938204
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.7 0.0 0.02 0.02 140 162 .. 87 109 .. 84 120 .. 0.84
2 ! 43.2 0.0 1.8e-15 1.8e-15 12 170 .. 175 321 .. 166 327 .. 0.84
Alignments for each domain:
== domain 1 score: 0.7 bits; conditional E-value: 0.02
UPF0020 140 alekLYseflrelkrvlrgggrl 162
+ +kL++++++e+k++++++g +
VIMSS938204 87 SDWKLWRKLGSEIKKRFKEEGSA 109
5699***************9876 PP
== domain 2 score: 43.2 bits; conditional E-value: 1.8e-15
UPF0020 12 LketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNa....ekagvgdli 105
+ ++LA+ +v+l+++++g ++lDP+CG Gt+ E l+g +++ gsD d+ ++ a++N+ ++ +++++
VIMSS938204 175 IPPRLARIMVNLTEVRKG-SFLDPFCGIGTVVQEFVLQGLTAY--------------------------GSDRDEGQIRDAKKNLtwlrKEFRLKNSA 245
6799***********998.699******************999..........................***************9444457889999* PP
UPF0020 106 efsqadaakLr.lkegevdvivtnpPY..........GerlgskkalekLYseflrelkrvlrgggrlvlltaenk 170
++++ da+kL+ ++ +d+ivt+p Ge+++ +++l+++Y ++ ++++ vl+++g+ v++++++k
VIMSS938204 246 HLEVCDARKLKkCFRQRFDAIVTEPYLgkplkrhpsrGEAIKLANELDRFYYSVFESFADVLKRNGKVVFVFPAYK 321
***********755669******97552222333333556666778899**********************99876 PP
Or compare VIMSS938204 to CDD or PaperBLAST