VIMSS939190 has 331 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.8e-31 94.4 0.0 2.5e-30 91.7 0.0 2.0 1 VIMSS939190
Domain annotation for each sequence (and alignments):
>> VIMSS939190
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 91.7 0.0 2.5e-30 2.5e-30 3 171 .. 156 298 .. 154 324 .. 0.91
Alignments for each domain:
== domain 1 score: 91.7 bits; conditional E-value: 2.5e-30
UPF0020 3 yRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekag 100
R+f+ p +L +++++alv+l+++ ++ +lDP+ G G+ilIEa+llg +++ g+D+ +++v+ga++N++++g
VIMSS939190 156 HRPFFRPISLHPRVSRALVNLTKA--TREILDPFMGAGGILIEAGLLGLRVY--------------------------GVDIRPEMVEGAETNLKHYG 225
79*******************965..678*********************99..........................******************** PP
UPF0020 101 vgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkal.ekLYseflrelkrvlrgggrlvlltaenka 171
v d +++ da+ L+ +++++++++t+pPYG + + ++++ ++LY++ lr++ +vl+ ggrl+++++++ +
VIMSS939190 226 VRDY-TLKLGDATRLEdlFPDKKFEAVATDPPYGTAATLAGRKrDELYRKALRSIYNVLEDGGRLAIAFPTDFN 298
*996.678889****9887888**************999988889************************98755 PP
Or compare VIMSS939190 to CDD or PaperBLAST