VIMSS940096 has 365 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.2e-44 137.1 0.0 1.9e-43 134.6 0.0 2.0 1 VIMSS940096
Domain annotation for each sequence (and alignments):
>> VIMSS940096
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 134.6 0.0 1.9e-43 1.9e-43 1 195 [. 191 358 .. 191 360 .. 0.96
Alignments for each domain:
== domain 1 score: 134.6 bits; conditional E-value: 1.9e-43
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaek 98
R +Rv+++pa+Lk+++A al++la+ + g +++DP+CGsGtilIE al g + ++g+++ r++++ga+ Na +
VIMSS940096 191 RPWRVYDHPAHLKASIANALIELAEPN-GGSFIDPFCGSGTILIELALRGYKGR------------------------IIGLEKYRKHIRGAEMNALS 263
78***********************97.5689******************9999........................9******************* PP
UPF0020 99 agvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkvkeknvklglll 195
agv d+ief q da+kL + ++vd v+n+PYG ++g+k ++ +LY +f +el++vl++ r v++t+e+ka+e+a+ ++ ++ ++ + + +g+l+
VIMSS940096 264 AGVLDKIEFIQGDATKLSQYVESVDFAVSNLPYGLKIGRKSMIPRLYMAFFSELSKVLEK--RGVFITTEKKAIERAILDNGFKIKHHRLIGHGGLM 358
******************8889**************************************..*********************99999998888876 PP
Or compare VIMSS940096 to CDD or PaperBLAST