PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS948439 to PF04359 (DUF493)

VIMSS948439 has 92 amino acids

Query:       DUF493  [M=84]
Accession:   PF04359.20
Description: Protein of unknown function (DUF493)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-25   73.9   0.0    7.3e-25   73.7   0.0    1.0  1  VIMSS948439  


Domain annotation for each sequence (and alignments):
>> VIMSS948439  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   7.3e-25   7.3e-25       3      84 .]      11      92 .]       9      92 .] 0.97

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 7.3e-25
       DUF493  3 lleFPcdfpikviGkaeeefeeavvevverhapefdpeevevrpSskgkYvSvtvtvtveskeqldaiyraLkahervkmvL 84
                  ++FP +f++ ++G+ae ++e+++ +++++   e+ +e++++++Ss+gkYvSv++ ++++++eq d+ ++aL++h++vk++L
  VIMSS948439 11 GFQFPGTFELSAMGTAERGLETELPRLLAATGVELLEESISWKHSSSGKYVSVRIGFRADTREQFDSAHQALREHPEVKWTL 92
                 689****************************99***********************************************97 PP



Or compare VIMSS948439 to CDD or PaperBLAST