PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS957061 to PF04402 (SIMPL)

VIMSS957061 has 257 amino acids

Query:       SIMPL  [M=205]
Accession:   PF04402.18
Description: Protein of unknown function (DUF541)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-57  181.6   8.9    1.4e-57  181.4   8.9    1.1  1  VIMSS957061  


Domain annotation for each sequence (and alignments):
>> VIMSS957061  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.4   8.9   1.4e-57   1.4e-57       3     205 .]      53     254 ..      51     254 .. 0.92

  Alignments for each domain:
  == domain 1  score: 181.4 bits;  conditional E-value: 1.4e-57
        SIMPL   3 VtGeaevevapDlatvtlgvetegkdaaeaqaevaervnavlaalkaaagieekdiqtsglsvspeydy.kngkrkitgyrasqsltvtvrdldklge 99 
                  ++ ++ev+++pDlat+t   ++++++aa+a ae+a++++++la+l+++ g++ +di+t+++++sp+y+y +n++++  gy+a+ s+++++rdl+++g+
  VIMSS957061  53 ISTTGEVKATPDLATITAMTSADSATAATATAENAKKMTNLLASLRES-GLSNDDIETRNINISPRYRYdQNKPPQRIGYQARSSIQIRIRDLNRIGA 149
                  6899******************************************76.************************************************* PP

        SIMPL 100 lldalveaganridgvsfslsdedelreearkeAvkdArakAealAkalgvklgrvvsisesgasgapppppaamaaaaaaaaaaaaatpiepgeitv 197
                  ++d++v+a ++ ++g++fsls++d+++++ar +A+++A+ +A+ +A++lg++++r+v ise+++ + p+  +++m a + ++a+aa+atp+ +g++tv
  VIMSS957061 150 IVDKMVQANVEDLEGPNFSLSNSDQAQDQARVKAIAAAKSRADLYARSLGMRVKRIVLISEGQQ-NTPSGIRPMMLAVSTRSADAAPATPVISGQQTV 246
                  *******99999*************************************************444.33333343444444459**************** PP

        SIMPL 198 sasVtvtf 205
                  s++++++f
  VIMSS957061 247 SVTIKAVF 254
                  ******98 PP



Or compare VIMSS957061 to CDD or PaperBLAST