PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS957198 to PF02153 (PDH_N)

VIMSS957198 has 293 amino acids

Query:       PDH_N  [M=154]
Accession:   PF02153.21
Description: Prephenate dehydrogenase, nucleotide-binding domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-60  189.7   0.0    1.5e-60  189.3   0.0    1.2  1  VIMSS957198  


Domain annotation for each sequence (and alignments):
>> VIMSS957198  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.3   0.0   1.5e-60   1.5e-60       2     153 ..      20     172 ..      19     173 .. 0.99

  Alignments for each domain:
  == domain 1  score: 189.3 bits;  conditional E-value: 1.5e-60
        PDH_N   2 aralrrkgfkvtvigydideekakaalelglvdeatdd.ieavkeadivllavPvevilevlkelaphlkedalitDvgsvKekvvkelekllkgksf 98 
                  ara+++++++vtv++yd++e+ +++a++l+l+d++tdd ++av+ead+vll+vPv+++  v++++ap+lk+d++i+D+gsvK++v+k+l+++l+++ +
  VIMSS957198  20 ARATKAYCPDVTVSLYDKSEFVRDRARALNLGDNVTDDiQDAVREADLVLLCVPVRAMGIVAAAMAPALKKDVIICDTGSVKVSVIKTLQDNLPNHII 117
                  9*************************************999********************************************************* PP

        PDH_N  99 vgghPmaGteksGvdaareelfenavviLtPtektdkealelvkelleevgarvi 153
                  v++hP+aGte++G+da+++elf++++viLtP+++t+++a++++++++ee+g+r++
  VIMSS957198 118 VPSHPLAGTENNGPDAGFAELFQDHPVILTPDAHTPAQAIAYIADYWEEIGGRIN 172
                  *****************************************************97 PP



Or compare VIMSS957198 to CDD or PaperBLAST