VIMSS958340 has 182 amino acids
Query: DUF308 [M=73]
Accession: PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-24 72.6 38.9 8.9e-17 47.5 15.5 3.1 3 VIMSS958340
Domain annotation for each sequence (and alignments):
>> VIMSS958340
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 47.5 15.5 8.9e-17 8.9e-17 3 72 .. 18 85 .. 16 86 .. 0.92
2 ! 37.8 15.4 9.3e-14 9.3e-14 2 73 .] 73 140 .. 72 140 .. 0.90
3 ! 7.2 4.3 0.00034 0.00034 1 50 [. 126 176 .. 126 182 .] 0.83
Alignments for each domain:
== domain 1 score: 47.5 bits; conditional E-value: 8.9e-17
DUF308 3 GilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
+++ i++Gi+a+ +P+++++a+ +++G++l+v++i+ ++++f++r+ +g wl+++ G++++i G++++
VIMSS958340 18 AVCQILFGIAAICFPFTMSIASGLFFGWILIVAAIFAIISGFSSRH--IRGHWLDIICGVIAFITGVIAI 85
7999**************************************6666..5558***************986 PP
== domain 2 score: 37.8 bits; conditional E-value: 9.3e-14
DUF308 2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllllf 73
G+++ i G++a+ +P+a++l++v+li+ +ll+ G++ql+ af+ + + +lll Gi+ +++l+l+f
VIMSS958340 73 CGVIAFITGVIAIEYPVASALTIVWLIACWLLLVGLTQLFIAFRIVT--ER--NWLLLRGIVNSLIALFLFF 140
59*****************************************4444..33..37899***********997 PP
== domain 3 score: 7.2 bits; conditional E-value: 0.00034
DUF308 1 llGilliilGilaliwPgaalla.lviliGvlllvsGivqlvaafaarkke 50
l+Gi+ ++++++++ + ++la l + +G+ ++ G+ + a+++++ +
VIMSS958340 126 LRGIVNSLIALFLFFSSDKTSLAfLGLAVGFAFVSEGVGMAMLALRLKRLQ 176
689************9977666615699***********999999888765 PP
Or compare VIMSS958340 to CDD or PaperBLAST