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Align VIMSS95860 to PF03729 (DUF308)

VIMSS95860 has 190 amino acids

Query:       DUF308  [M=73]
Accession:   PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-23   68.4  37.2    1.3e-15   43.7  13.5    3.1  3  VIMSS95860  


Domain annotation for each sequence (and alignments):
>> VIMSS95860  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7  13.5   1.3e-15   1.3e-15       2      72 ..      27      97 ..      26      98 .. 0.94
   2 !   35.3  13.3   5.5e-13   5.5e-13       1      72 [.      84     153 ..      84     154 .. 0.93
   3 !    4.7   2.9    0.0019    0.0019      13      40 ..     153     180 ..     151     190 .] 0.80

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 1.3e-15
      DUF308  2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72
                +++ll i+G+l++ +P++++ +l++++G+ll++sGi+ +v+ f++r+++ ++ +  +l+++ y+++G++++
  VIMSS95860 27 IAVLLFIVGLLCISFPFVSGDILSTVVGALLICSGIALIVGLFSNRSHNFWPVLSGFLVAVAYLLIGYFFI 97
                68*****************************************99998888877888************98 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 5.5e-13
      DUF308   1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllll 72 
                 l++++++++G +++  P + ++a++ +i+ l++v+G+++l++ +  r+++ +g wl+l++G+l+i+++ ++l
  VIMSS95860  84 LVAVAYLLIGYFFIRAPELGIFAIAAFIAGLFCVAGVIRLMSWY--RQRSMKGSWLQLVIGVLDIVIAWIFL 153
                 5899************************************9888..66667778**************9997 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0019
      DUF308  13 aliwPgaallalviliGvlllvsGivql 40 
                 + + P+++++++++l+G+ l++s++  +
  VIMSS95860 153 LGATPMVSVTLVSTLVGIELIFSAASLF 180
                 5578******************998765 PP



Or compare VIMSS95860 to CDD or PaperBLAST