PaperBLAST – Find papers about a protein or its homologs

 

Align WP_000410770.1 to PF03729 (DUF308)

WP_000410770.1 has 170 amino acids

Query:       DUF308  [M=73]
Accession:   PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-25   75.2  63.6      2e-17   49.6  13.4    3.1  3  WP_000410770.1  


Domain annotation for each sequence (and alignments):
>> WP_000410770.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6  13.4     2e-17     2e-17       1      73 []      14      86 ..      14      86 .. 0.98
   2 !   32.6  21.6   3.9e-12   3.9e-12       2      73 .]      73     140 ..      72     140 .. 0.91
   3 !   18.1  12.6   1.3e-07   1.3e-07       5      44 ..     130     169 ..     128     170 .] 0.95

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 2e-17
          DUF308  1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllllf 73
                    ++G+ll+ l+++++++P   + a+++liG+++l+ G++q+v   +a++  gg+  + l++Gi++i++Gl+++f
  WP_000410770.1 14 IMGVLLLMLAVVIFTFPIENFYAITWLIGLFVLINGVIQIVYRRKAKALVGGNQNWILFMGIVDILFGLIVIF 86
                    79*********************************************************************97 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 3.9e-12
          DUF308   2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllllf 73 
                     +Gi+ i++G++++++ ga+++++++++++++++s+i++l+ +f   + +g+ ++ ++++ +l i++G++llf
  WP_000410770.1  73 MGIVDILFGLIVIFNVGASSAFFIYMFAFWFIFSSIAGLF-TF--SG-SGSLKLISVIFNLLGIVFGVILLF 140
                     8**************************************6.66..44.566778899*************98 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 1.3e-07
          DUF308   5 lliilGilaliwPgaallalviliGvlllvsGivqlvaaf 44 
                     l i++G+++l++P++ +++++++i++ +++ G++ +v a+
  WP_000410770.1 130 LGIVFGVILLFNPLMGIVFISTMIAIAFVFVGVIYVVDAL 169
                     89********************************999886 PP



Or compare WP_000410770.1 to CDD or PaperBLAST