PaperBLAST – Find papers about a protein or its homologs

 

Align WP_000734706.1 to PF06551 (DUF1120)

WP_000734706.1 has 229 amino acids

Query:       DUF1120  [M=116]
Accession:   PF06551.16
Description: Protein of unknown function (DUF1120)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-49  153.1   5.6    2.9e-49  152.3   1.9    2.2  2  WP_000734706.1  


Domain annotation for each sequence (and alignments):
>> WP_000734706.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   1.9   2.9e-49   2.9e-49       1     116 []      27     132 ..      27     132 .. 0.99
   2 ?    2.0   0.1     0.012     0.012      63     105 ..     143     186 ..     136     192 .. 0.77

  Alignments for each domain:
  == domain 1  score: 152.3 bits;  conditional E-value: 2.9e-49
         DUF1120   1 lkvtGeltagaCtPvlsgGGvvdyGtkavsaLsatklnqlGtkditltitCeaatkiavtakDnradsivalkdssgqakvldiknallggsivk 95 
                     lk+tG+lt+gaC+P+ls+GGvvd+Gtkavs+L +t++nqlG+kditlti+C a++k++++a+Dn+ ds          a++l+i+na++gg++++
  WP_000734706.1  27 LKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTQTNQLGYKDITLTIQCLAPAKVGWVATDNHGDS----------ATTLTIDNATFGGQNNR 111
                     79******************************************************************..........99*************** PP

         DUF1120  96 qttrafGlGktkdgkkiGays 116
                     ++++++GlG+t+dg+kiGay+
  WP_000734706.1 112 IPNYQLGLGTTADGIKIGAYG 132
                     *******************96 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.012
         DUF1120  63 Dnradsivalkdssgqakvl.diknallggsivkqttrafGlGk 105
                     D  +  +va +ds+++  +l + ++  l++++   tt++ G G+
  WP_000734706.1 143 DGVKTKMVASNDSNPGVWALaSNEYVALTNTFPTRTTYSVGDGN 186
                     55667899*****9998776245677789999999999888775 PP



Or compare WP_000734706.1 to CDD or PaperBLAST